There is a lot going on so I will have to be brief.
You have to compare temp, map, and tps. All these play a part in the fuel pulse width. Along with the pulse width is the iac steps based on the table.
I would have to look up your bcc to see the iac table(later tonight).
But if you look the blm normally drops(goes Rich) as you open the throttle, map goes up/tps goes up.
Then as you let off the throttle the fuel will be decreased as you decel and the blm goes higher(goes leaner).
Now if you step on it harder like on the freeway ramp...the tps and map goe up a lot...this will put the ECM in power enrichment mode and it will add additial fuel and timing.
Now when I went back and looked at the log from the 29th...the data all seemed to flow and the blm's all appear to be correct. Leading me to believe it's more of a program adjustment then a fault with the system.
If the fuel went real lean(170) while accel then I would be more concerned.
But yours seems to be leaning as you go to light throttle/coast.
Is there anyone around you that can program a chip with an adjusted file?
As for the timing connector...the engine must be off before it is reconnected. The ECM should also be unplugged to clear the 42 error code that normally happens when running the engine with the bypass unhooked.