Ok -
let's back up several steps here...
First, a little about me. I picked up a Scout a year and a half ago specifically because I wanted something to tinker with. My mechanical skills are very limited, and I've asked a whole bunch of "newbie" questions on this site and received patient and helpful responses. That's a lot of the reason I follow these threads and also why I try to provide information when I can. I also try to do a little research first. Sometimes this doesn't work because I'm searching for the wrong terms or the stuff I'm searching for is too short (try to find anything on "egr"...). But by doing the research first and explaining what I tried so far in my posts I try to make sure I'm not wasting other people's time asking for information that's readily available.
You started with "some one told me to..." - personally, I wouldn't do it the way this someone told you to, and it sounds like it's not working terribly well for you either.
Second, removing the thermostat to flush the coolant is a bad idea. Asking the question suggests that your level of mechanical competence is on par with my own

I'd strongly recommend finding someone local with expertise who's willing to lend a hand for food and beer. Not knowing where you are I can't tell you how to do this, but there seem to be local Scout groups all over the place.
The link I posted directs you to several other links on this site that provide good information on the right way to flush coolant. In addition to the process and recommended tools (prestone flush kit), there is a wealth of information on other factors to consider, like proper disposal of coolant. In addition to being good for keeping down the stray dog population there May be legalities associated with just dumping the stuff on the ground. Even if you collect it properly disposal May be challenging in your area. Some folks let a garage handle coolant flushing for just this reason.
There's nothing particularly special about an IH engine when it comes to flushing a cooling system. Take a few minutes to search this site. Take a few more minutes to search the internet in general about flushing coolant. Let us know what you plan to do and we'll provide feedback on whether we think it's a good idea or not. My opinion (note qualifications above) is that you need a new plan. I'd follow the advice mr. Mayben provides in the links mentioned in my previous post.
It took me a while to figure this out, but it pays to trust mr. Mayben implicitly on IH matters. You won't find better technical advice anywhere else.